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Sessions for Room: Union B/Hyatt

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SessionDate/TimeTitleSection/TopicTypeAuthorsKeywords

Monday, July 9th

Monday, July 9th
10:15 am to 11:15 am · Union B/Hyatt
Session 8: Contributed Papers: Molecular Biology
Presiding: Dragomira Markova, University of Illinois at Chicago
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8001July 9th 10:15 amEvolutionary Dynamics of Pong-like Transposable Elements in the wheat tribe (Triticeae)
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Molecular BiologyPaperMarkova, Dragomira; Mason-Gamer, Roberta.Transposable elements
Triticeae
wheat
Pong-like
phylogeny
8002July 9th 10:30 amLarge pericentromeric deletions near the BREVIPEDICELLUS locus are associated with MARS binding sites and regions of ancestral chromosomal fusion events in Arabidopsis.
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Molecular BiologyPaperRiggs, Dan; delaPaz, Joelle; Stronghill, Patti; Douglas, Scott; Saravia, Sandy; Wright, Stephen; Hasenkampf, Clare.chromosome
Evolution
Rearrangement
hot spot
chromatin
8003July 9th 10:45 amEnhancing PCR amplification of DNA from recalcitrant plant species and herbarium specimens using a trehalose-based additive
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Molecular BiologyPaperSamarakoon, Tharangamala; Wang, Shiao; Alford, Mac.Amplification
DNA
DNA degradation
inhibitors
PCR
8004July 9th 11:00 amDNA Barcoding Medicinal Plants of Pakistan
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Molecular BiologyPaperSchori, Melanie; Showalter, Allan.DNA barcoding
Medicinal plants
DNA sequencing
Monday, July 9th
1:30 pm to 4:45 pm · Union B/Hyatt
Session 16: Contributed Papers: Molecular Ecology and Evolution
Presiding: Shannon Datwyler, CSU Sacramento
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16001July 9th 1:30 pmTesting the hypothesis of the hybrid origin of Penstemon newberryi var. berryi (Plantaginaceae)
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Molecular Ecology and EvolutionPaperDatwyler, Shannon.Penstemon
hybridization
hybrid derivative
16002July 9th 1:45 pmFine-scale evolution of plastid genomes across Cuscuta (Convolvulaceae): Extensive loss of plastid genes within two clades of subgenus Grammica
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Molecular Ecology and EvolutionPaperBraukmann, Thomas; Kuzmina, Maria; Stefanovic, Sasa.plastome
parasitic plant
Cuscuta
hybridization
16003July 9th 2:00 pmBroomrape plastid genomes reveal distinct patterns of functional and physical gene deletion under relaxed selective constraints
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Molecular Ecology and EvolutionPaperWicke, Susann; Mueller, Kai; Quandt, Dietmar; Wickett, Norman; dePamphilis, Claude; Schneeweiss, Gerald.parasitic plants
Plastid genome
reductive evolution
relaxed selection
pseudogenization
gene loss
Orobanchaceae
hemiparasitic plants
16004July 9th 2:15 pmGenetic Differentiation of Andropogon gerardii (Big Bluestem) Ecotypes Occurring Along a Natural Precipitation Gradient
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Molecular Ecology and EvolutionPaperGray, Miranda; St. Amand, Paul; Johnson, Loretta; Akhunov, Eduard; Garrett, Karen; Knapp, Mary; Morgan, Ted; Bai, Guihua.local adaptation
Population differentiation
genetic diversity
climate change
16005July 9th 2:30 pmThe genetic basis of variation in flowering time in Brassica rapa populations.
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Molecular Ecology and EvolutionPaperLitt, Amy; Nowogrodzki, Anna; Jordan, Kevin; Franks, Steven.Flowering time
Brassica rapa
FLC
SOC1
FT
16006July 9th 2:45 pmMolecular analysis of pronghorn antelope diet using semiconductor sequencing
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Molecular Ecology and EvolutionPaperFehlberg, Shannon; Tew, Jessica; Tluczek, Melanie; Salywon, Andrew.DNA barcoding
conservation
herbivory
next generation sequencing
Ion Torrent
16007July 9th 3:00 pmMolecular phylogenetic analysis of Coreopsis nuecensoides and C. nuecensis: a putative progenitor-derivative species pair
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Molecular Ecology and EvolutionPaperFonnemann, Brandon J.; Mason-Gamer, Roberta.speciation
endemism
Asteraceae
Systematics
Phylogenetics
July 9th 3:15 pmBreak
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Molecular Ecology and Evolution
16009July 9th 3:45 pmPhylogeography and conservation genetics of the Caribbean Zamia clade: Identification of single copy nuclear genes
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Molecular Ecology and EvolutionPaperSalas-Leiva, Dayana; Meerow, Alan; Francisco-Ortega, Javier; Griffith, Patrick; Calonje, Michael; Stevenson, Dennis; Nakamura, Kyoko.Single/low copy nuclear genes
APVO SSC genes
EST Zamia databases
Zamia pumila complex
16010July 9th 4:00 pmMolecular and chemical differences among Asian eggplants analyzed in a framework of their history of utilization
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Molecular Ecology and EvolutionPaperMeyer, Rachel; Whitaker, Bruce; Little, Damon; Litt, Amy.crop plants
wild relative
phenolic compounds
Phylogeography
artificial selection
Domestication
Solanaceae
Solanum
food
phenolic pathway
16011July 9th 4:15 pmChanges in gene content, substitutional rates, and selectional pressures in chloroplast genomes of carnivorous Lentibulariaceae
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Molecular Ecology and EvolutionPaperSchaeferhoff, Bastian; Wicke, Susann; dePamphilis, Claude; Fleischmann, Andreas; Heubl, Guenther; Mueller, Kai.Plastid genome
carnivorous plants
genome-wide substitution rate analysis
mutational rates
Lentibulariaceae
16012July 9th 4:30 pmAsymmetric gene flow and population growth: complex demographic processes during rice domestication
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Molecular Ecology and EvolutionPaperHuang, Pu; Schaal, Barbara.Oryza rufipogon
Oryza sativa
Asymmetric gene flow
Domestication

Tuesday, July 10th

Tuesday, July 10th
8:00 am to 9:45 am · Union B/Hyatt
Session 21: Contributed Papers: Ecological Section: Population Biology
Presiding: Madhav Nepal, South Dakota State University
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21001July 10th 8:00 amPopulation Genetics of Falcaria vulgaris (Sickleweed) in North America
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Ecological SectionPaperPiya, Sarbottam; Nepal, Madhav; Butler, Jack ; Larson, Gary; Neupane, Achal.Sickleweed
microsatellites
Falcaria vulgaris
population genetics
21002July 10th 8:15 amInbreeding alters volatile signalling phenotypes and influences defense against in horsenettle (Solanum carolinense L.)
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Ecological SectionPaperKariyat, Rupesh; mauck, kerry; De Moraes, Consuelo; Mescher, Mark; Stephenson, Andrew.inbreeding
herbivory
inducible defenses
horsenettle
21003July 10th 8:30 amPhenotypically plastic semelparity in Lobelia inflata
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Ecological SectionPaperHughes , P. William; Simons, Andrew.Semelparity
Life-history evolution
Monocarpy
Phenotypic plasticity
Reproductive effort
Bolting
21004July 10th 8:45 amEffects of temperature, resources, and plant-pollinator interactions on reproductive success in Claytonia virginica (Portulacaceae)
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Ecological SectionPaperRobertshaw, Asya; Emery, Nancy.spring ephemerals
Claytonia virginica
Pollen limitation
climate change
plant-pollinator interaction
21005July 10th 9:00 amEarly bloomers in a changing climate: Impact of rising temperatures on the flowering time of Greater Philadelphia native plant species
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Ecological SectionPaperPanchen, Zoe.climate change
Flowering time
herbarium records
phenology
21006July 10th 9:15 amLong-term shifts in species' flowering periods in a sub-alpine plant community
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Ecological SectionPaperInouye, David; McKinney, Amy.flowering
phenology
Rocky Mt. Biological Laboratory
long-term
first flowering
peak flowering
snowmelt
temperature
21007July 10th 9:30 amEffects of climate change on the future distribution of frailejones (Espeletiinae Cuatrec., Asteraceae) in the Tropical Andes
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Ecological SectionPaperDiazgranados, Mauricio; Barber, Janet.Espeletiinae
frailejones
climate change
Páramo
Andes
Maxent
species distribution modeling
ecological niche modeling
species extinction
Tuesday, July 10th
1:30 pm to 3:15 pm · Union B/Hyatt
Session 36: Contributed Papers: Ecological Section: Functional Traits & Resource Responses
Presiding: Tracy Hawkins, USDA - Forest Service
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36001July 10th 1:30 pmFunctional traits in fine roots: integrating below and above ground traits in Angiosperms.
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Ecological SectionPaperValverde, Oscar; Blackwood, Christopher.functional traits
roots
Leaf
tissue chemistry
Life-history evolution
36002July 10th 1:45 pmTesting inter-sexual competition and the influence of mycorrhizal fungi and phosphorus on fitness of a dioecious grass
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Ecological SectionPaperRogers, Sally; Eppley, Sarah.AM fungi
Niche partitioning
Spatial segregation of the sexes
dioecy
36003July 10th 2:00 pmOak Vulnerability to Xylem Cavitation in a Sky Island Mountain Range
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Ecological SectionPaperLackey, Russell; Schwilk, Dylan.
36004July 10th 2:15 pmThe scaling of area versus mass of leaves sorted by the different morphologies of Sassafras albidum
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Ecological SectionPaperNiklas, Karl; Christianson, Michael; Cobb, Edward.specific leaf area
diminishing returns
36005July 10th 2:30 pmPatterns of Autumn Leaf Color Change in New England Plants
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Ecological SectionPaperLee, David; O'Keefe, John; Jestrow, Brett.autumn
Leaf
color
function
anthocyanin
36006July 10th 2:45 pmLeaf traits and litter flammability: Understanding multi-species mixtures
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Ecological SectionPaperQuinones De Magalhaes, Rita Margarida; Schwilk, Dylan.functional traits
Flammability
species interactions
Non-additivity
Leaf litter
Mixed-conifer forest
36007July 10th 3:00 pmThe influence of temperature and winter flooding on the seed ecology of Quercus pagoda Raf
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Ecological SectionPaperHawkins, Tracy; Thornton, Rory.red oak
cherrybark oak
Quercus
bottomland hardwoods
seed germination
seed dormancy break
Tuesday, July 10th
5:30 pm to 6:30 pm · Union B/Hyatt
Session M27: Meeting: Ecological Section Business Meeting
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July 10th 5:30 pmEcological Section Business Meeting
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Ecological Section

Wednesday, July 11th

Wednesday, July 11th
8:00 am to 11:45 am · Union B/Hyatt
Session 44: Contributed Papers: Genomics/Proteomics
Presiding: Jennifer Brown, Miami University
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44001July 11th 8:00 amExpanding our understanding of the evolution of the Carica papaya X and Y chromosomes
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Genomics / ProteomicsPaperBrown, Jennifer; Lappin, Fiona; Weingartner, Laura; Hawkins, Kevin; McDermott, Ross; Harkess, Alex; Moore, Richard.Sex chromosome
Molecular evolution
Genome evolution
44002July 11th 8:15 amThe relationship between recombination and genomic diversity in Carica papaya
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Genomics / ProteomicsPaperBrown, Jennifer; Hawkins, Kevin; McDermott, Ross; Moore, Richard.
44003July 11th 8:30 amIdentification and evolution of putative trichome genes in milkweeds (Asclepias, Apocynaceae).
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Genomics / ProteomicsPaperFathepure, Shakuntala; Straub, Shannon; Liston, Aaron; Cronn, Richard; Fishbein, Mark.
44004July 11th 8:45 amMixture models versus a priori partitioning schemes in analyses of plastome data sets: alarge angiosperm matrix revisited
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Genomics / ProteomicsPaperClements, Mark; Moore, Michael; Mathews, Sarah.angiosperm
phylogeny
data partitioning
mixture models
Plastid genome
44005July 11th 9:00 amThe draft genome sequence of Amborella trichopoda sheds light on the ancestral angiosperm genome
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Genomics / ProteomicsPaperDer, Joshua; Ayyampalayam, Saravanaraj; Burnett, James; Chamala, Srikar; Chanderbali, Andre; Estill, James; Jiao, Yuannian; Liu, Kun; Ralph, Paula; Lan, Tianying; Lyons, Eric; Tang, Haibao; Tomsho, Lynn P.; Wafula, Eric; Walts, Brandon; Albert, Victor; Barbazuk, Brad; Ma, Hong; Leebens-Mack, Jim; Palmer, Jeffrey; Rounsley, Steve; Sankoff, David; Schuster, Stephan C.; Soltis, Douglas; Soltis, Pamela; Wessler, Susan; Wing, Rod; dePamphilis, Claude.Amborella
Amborella trichopoda
Whole Genome Shotgun
Genome Assembly
Genome evolution
Ancestral Genome
Nuclear Genome
FISH
Optical Map
angiosperm
Basal Angiosperm
44006July 11th 9:15 amScaling phylogenomics to over one thousand species: Relationships of Viridiplantae inferred from the 1KP (One Thousand Plants) project pilot data set
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Genomics / ProteomicsPaperWickett, Norman; Leebens-Mack, Jim; Carpenter, Eric; Mirarab, Siavash; Ayyampalayam, Saravanaraj; Barker, Mike; Burleigh, J. Gordon; Gitzendanner, Matthew; Gonzales, Michael; Matasci, Naim; dePamphilis, Claude; Ruhfel, Brad; Wafula, Eric; Warnow, Tandy; Chen, Tao; Deyholos, Michael; Graham, Sean; Mathews, Sarah; Melkonian, Michael; Soltis, Douglas; Soltis, Pamela; Shaw, Jonathan; Stevenson, Dennis; Surek, Barbara; Villarreal, Juan; Zhang, Yong; Tian, Zhijian; Wong, Gane Ka-Shu.Genomics
transcriptomes
phylogenomics
green plants
Viridiplantae
land plants
Embryophytes
single/low copy nuclear genes
species tree reconciliation
supertrees
44007July 11th 9:30 amThe effect of paleopolyploidy on genome evolution in Agavoideae
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Genomics / ProteomicsPaperMcKain, Michael R.; Wickett, Norman; Zhang, Yeting; Ayyampalayam, Saravanaraj; McCombie, Richard; Chase, Mark; Pires, Joseph; dePamphilis, Claude; Leebens-Mack, Jim.paleopolyploidy
Agavoideae
bimodal karyotype
Sequence capture
July 11th 9:45 amBreak
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Genomics / Proteomics
44009July 11th 10:15 amThe Parasitic Plant Genome Project
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Genomics / ProteomicsPaperHonaas, Loren; Wafula, Eric; Wickett, Norman; Zhang, Yeting; Zhang , Zhenzhen; Der, Joshua; Ralph, Paula; Landherr, Lena; Bao, Yongde; Wu, Biao; Gunathilake, Pradeepa; Fernandez-Aparicio, Monica; Das, Malay; Huang, Kan; Tomsho, Lynn P.; Schuster, Stephan C.; Taylor, Chris G. ; Altman, Naomi S. ; Yoder, John I. ; Timko, Michael P.; Westwood, James; dePamphilis, Claude.parasitic plant
Genomics
Orobanchaceae
EST
de novo transcriptome
44010July 11th 10:30 amTranscriptome dynamics in the dormancy-spring growth transition of Douglas-fir needles.
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Genomics / ProteomicsPaperKnaus, Brian J.; Dolan, Peter; Denver, Dee; Cronn, Richard.Bud burst
Dormancy
Douglas-fir
Pseudotsuga menzeisii
RNA-seq
Transcriptomics
44011July 11th 10:45 amUsing transcriptomic data to develop sequence-capture probes for diverse lineages.
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Genomics / ProteomicsPaperDouglas, Norman; Moore, Michael.Transcriptomics
marker development
Sequence capture
Phylogenetics
population genetics
44012July 11th 11:00 amLarge-scale transcriptome sequencing and phylogenetic hypotheses for monocots based on analyses 970 (and up to 1888) low copy nuclear genes
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Genomics / ProteomicsPaperdePamphilis, Claude; Wickett, Norman; Duarte, JIll; Der, Joshua; McCain, Michael; Leebens-Mack, Jim; Edger, Patrick; Pires, Joseph; Wafula, Eric; Zhang, Yeting; Ayyampalayam, Saravanaraj; Barrett, Craig; Davis, Jerrold; Graham, Sean; McCombie, Richard; Zomlefer, Wendy; Stevenson, Dennis; Givnish, Thomas.monocotyledons
phylogenomics
Single/low copy nuclear genes
44013July 11th 11:15 amThe challenge of assembling highly heterozygous genomes from short read sequences
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Genomics / ProteomicsPaperWeitemier, Kevin; Straub, Shannon; Parks, Matt; Cronn, Richard; Fishbein, Mark; Liston, Aaron.Apocynaceae
Asclepias
Genome Assembly
Heterozygosity
SNP detection
Sequence capture
44014July 11th 11:30 am
Canceled
Molecular dissection of male germ lineage-specific promoters reveals multiple regulatory motifs
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Genomics / ProteomicsPaperGou, Xiaoping; Yuan, Tong; Wei, Xiaoping; Zhang, Jinghua; Li, Jia; Russell, Scott.gene expression
sperm cell
male germ lineage
promoter
PzIPT

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