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Sessions for Friday, July 6th, 2012
AfternoonRG1
Sessions for Saturday, July 7th, 2012
MorningRG2BR1WS01
AfternoonPR1
EveningM01
Sessions for Sunday, July 8th, 2012
MorningPR2BR2RG3BR3M02WS02WS03WS06WS07M03M04M05SVWS05M06M11WS08M07M08
AfternoonM09WS04WS09WS10WS15W99WS12WS13WS14M10M12M13M14M15
EveningS1MX1
Sessions for Monday, July 9th, 2012
MorningBR4BR5M16PR3RG4SY01SY023245617BR6C1EX1BK1C289S5
AfternoonL2L3L4M34M35M36M37M38SY03101112131415161718C3SY04BK219M17M18M19PMX2
EveningR1M39BQ1M20R2M21MX3
Sessions for Tuesday, July 10th, 2012
MorningBR7M22PR4RG5TE11TE11A21222526SY0523242827EX2M23BK33429303132D1S2
AfternoonL5L6M40SY06353637383940C4SY0741S3BK442M24M25D2S4M26M27M28R4
EveningMX4BQ2MX5
Sessions for Wednesday, July 11th, 2012
MorningBR8M29PR5RG6BR9434445SY0846SY09C54748EX3BK54950S6
AfternoonL1L7M33L8C751525354C6SY10SY11BK6M30M31M32R3S7
EveningMX6BQ3

Presentations for Session 44

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OrderDate/TimeTitleSection/TopicTypeAuthorsKeywords
Wednesday, July 11th
8:00 am to 11:45 am · Union B/Hyatt
Session 44: Contributed Papers: Genomics / Proteomics
Presiding: Jennifer Brown, Miami University
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44001July 11th 8:00 amExpanding our understanding of the evolution of the Carica papaya X and Y chromosomes
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Genomics / ProteomicsOral PaperBrown, Jennifer; Lappin, Fiona; Weingartner, Laura; Hawkins, Kevin; McDermott, Ross; Harkess, Alex; Moore, Richard.Sex chromosome
Molecular evolution
Genome evolution
44002July 11th 8:15 amThe relationship between recombination and genomic diversity in Carica papaya
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Genomics / ProteomicsOral PaperBrown, Jennifer; Hawkins, Kevin; McDermott, Ross; Moore, Richard.
44003July 11th 8:30 amIdentification and evolution of putative trichome genes in milkweeds (Asclepias, Apocynaceae).
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Genomics / ProteomicsOral PaperFathepure, Shakuntala; Straub, Shannon; Liston, Aaron; Cronn, Richard; Fishbein, Mark.
44004July 11th 8:45 amMixture models versus a priori partitioning schemes in analyses of plastome data sets: alarge angiosperm matrix revisited
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Genomics / ProteomicsOral PaperClements, Mark; Moore, Michael; Mathews, Sarah.angiosperm
phylogeny
data partitioning
mixture models
Plastid genome
44005July 11th 9:00 amThe draft genome sequence of Amborella trichopoda sheds light on the ancestral angiosperm genome
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Genomics / ProteomicsOral PaperDer, Joshua; Ayyampalayam, Saravanaraj; Burnett, James; Chamala, Srikar; Chanderbali, Andre; Estill, James; Jiao, Yuannian; Liu, Kun; Ralph, Paula; Lan, Tianying; Lyons, Eric; Tang, Haibao; Tomsho, Lynn P.; Wafula, Eric; Walts, Brandon; Albert, Victor; Barbazuk, Brad; Ma, Hong; Leebens-Mack, Jim; Palmer, Jeffrey; Rounsley, Steve; Sankoff, David; Schuster, Stephan C.; Soltis, Douglas; Soltis, Pamela; Wessler, Susan; Wing, Rod; dePamphilis, Claude.Amborella
Amborella trichopoda
Whole Genome Shotgun
Genome Assembly
Genome evolution
Ancestral Genome
Nuclear Genome
FISH
Optical Map
angiosperm
Basal Angiosperm
44006July 11th 9:15 amScaling phylogenomics to over one thousand species: Relationships of Viridiplantae inferred from the 1KP (One Thousand Plants) project pilot data set
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Genomics / ProteomicsOral PaperWickett, Norman; Leebens-Mack, Jim; Carpenter, Eric; Mirarab, Siavash; Ayyampalayam, Saravanaraj; Barker, Mike; Burleigh, J. Gordon; Gitzendanner, Matthew; Gonzales, Michael; Matasci, Naim; dePamphilis, Claude; Ruhfel, Brad; Wafula, Eric; Warnow, Tandy; Chen, Tao; Deyholos, Michael; Graham, Sean; Mathews, Sarah; Melkonian, Michael; Soltis, Douglas; Soltis, Pamela; Shaw, Jonathan; Stevenson, Dennis; Surek, Barbara; Villarreal, Juan; Zhang, Yong; Tian, Zhijian; Wong, Gane Ka-Shu.Genomics
transcriptomes
phylogenomics
green plants
Viridiplantae
land plants
Embryophytes
single/low copy nuclear genes
species tree reconciliation
supertrees
44007July 11th 9:30 amThe effect of paleopolyploidy on genome evolution in Agavoideae
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Genomics / ProteomicsOral PaperMcKain, Michael R.; Wickett, Norman; Zhang, Yeting; Ayyampalayam, Saravanaraj; McCombie, Richard; Chase, Mark; Pires, Joseph; dePamphilis, Claude; Leebens-Mack, Jim.paleopolyploidy
Agavoideae
bimodal karyotype
Sequence capture
44008July 11th 9:45 amBreak
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Genomics / Proteomics
44009July 11th 10:15 amThe Parasitic Plant Genome Project
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Genomics / ProteomicsOral PaperHonaas, Loren; Wafula, Eric; Wickett, Norman; Zhang, Yeting; Zhang , Zhenzhen; Der, Joshua; Ralph, Paula; Landherr, Lena; Bao, Yongde; Wu, Biao; Gunathilake, Pradeepa; Fernandez-Aparicio, Monica; Das, Malay; Huang, Kan; Tomsho, Lynn P.; Schuster, Stephan C.; Taylor, Chris G. ; Altman, Naomi S. ; Yoder, John I. ; Timko, Michael P.; Westwood, James; dePamphilis, Claude.parasitic plant
Genomics
Orobanchaceae
EST
de novo transcriptome
44010July 11th 10:30 amTranscriptome dynamics in the dormancy-spring growth transition of Douglas-fir needles.
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Genomics / ProteomicsOral PaperKnaus, Brian J.; Dolan, Peter; Denver, Dee; Cronn, Richard.Bud burst
Dormancy
Douglas-fir
Pseudotsuga menzeisii
RNA-seq
Transcriptomics
44011July 11th 10:45 amUsing transcriptomic data to develop sequence-capture probes for diverse lineages.
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Genomics / ProteomicsOral PaperDouglas, Norman; Moore, Michael.Transcriptomics
marker development
Sequence capture
Phylogenetics
population genetics
44012July 11th 11:00 amLarge-scale transcriptome sequencing and phylogenetic hypotheses for monocots based on analyses 970 (and up to 1888) low copy nuclear genes
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Genomics / ProteomicsOral PaperdePamphilis, Claude; Wickett, Norman; Duarte, JIll; Der, Joshua; McCain, Michael; Leebens-Mack, Jim; Edger, Patrick; Pires, Joseph; Wafula, Eric; Zhang, Yeting; Ayyampalayam, Saravanaraj; Barrett, Craig; Davis, Jerrold; Graham, Sean; McCombie, Richard; Zomlefer, Wendy; Stevenson, Dennis; Givnish, Thomas.monocotyledons
phylogenomics
Single/low copy nuclear genes
44013July 11th 11:15 amThe challenge of assembling highly heterozygous genomes from short read sequences
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Genomics / ProteomicsOral PaperWeitemier, Kevin; Straub, Shannon; Parks, Matt; Cronn, Richard; Fishbein, Mark; Liston, Aaron.Apocynaceae
Asclepias
Genome Assembly
Heterozygosity
SNP detection
Sequence capture
44014July 11th 11:30 am
Canceled
Molecular dissection of male germ lineage-specific promoters reveals multiple regulatory motifs
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Genomics / ProteomicsOral PaperGou, Xiaoping; Yuan, Tong; Wei, Xiaoping; Zhang, Jinghua; Li, Jia; Russell, Scott.gene expression
sperm cell
male germ lineage
promoter
PzIPT

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